IL_1VX6_050

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAC*GACC

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Missing nucleotides: 1134, 1135, 1136, 1139, 1158, 1159, 1160, 1161

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX6_050 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.2859

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|G|1134
1VX6|1|A|G|1135
1VX6|1|A|A|1136
1VX6|1|A|C|1139
*
1VX6|1|A|G|1158
1VX6|1|A|A|1159
1VX6|1|A|C|1160
1VX6|1|A|C|1161

Current chains

Chain A

28S ribosomal RNA

Nearby chains