IL_1VX6_153

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAC*GAA

Length

8 nucleotides

Bulged bases

1VX6|1|A|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX6_153 not in the Motif Atlas

Geometric match to IL_8CRE_066

Geometric discrepancy: 0.1759

The information below is about IL_8CRE_066

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

1VX6|1|A|U|1650
1VX6|1|A|C|1651
1VX6|1|A|A|1652
1VX6|1|A|A|1653
1VX6|1|A|C|1654
*
1VX6|1|A|G|1662
1VX6|1|A|A|1663
1VX6|1|A|A|1664

Current chains

Chain A

28S ribosomal RNA

Nearby chains