IL_1VX6_157

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX6_157 not in the Motif Atlas

Geometric match to IL_8CRE_082

Geometric discrepancy: 0.0686

The information below is about IL_8CRE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1VX6|1|A|G|2166
1VX6|1|A|G|2167
1VX6|1|A|A|2168
1VX6|1|A|A|2169
1VX6|1|A|G|2170
1VX6|1|A|U|2171
1VX6|1|A|C|2172
1VX6|1|A|G|2173
1VX6|1|A|G|2174
*
1VX6|1|A|C|2626
1VX6|1|A|U|2627
1VX6|1|A|G|2628
1VX6|1|A|U|2629
1VX6|1|A|C|2630

Current chains

Chain A

28S ribosomal RNA

Nearby chains