IL_1VY7_217
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 1VY7|1|CA|A|1256, 1VY7|1|CA|U|1257, 1VY7|1|CA|U|1278, 1VY7|1|CA|A|1280, 1VY7|1|CA|U|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_217 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.456
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
1VY7|1|CA|G|1255
1VY7|1|CA|A|1256
1VY7|1|CA|U|1257
1VY7|1|CA|G|1258
*
1VY7|1|CA|C|1277
1VY7|1|CA|U|1278
1VY7|1|CA|A|1279
1VY7|1|CA|A|1280
1VY7|1|CA|U|1281
1VY7|1|CA|C|1282
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CC
- 30S ribosomal protein S3
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14 type Z
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