IL_1YJN_106

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUU*ACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_106 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.1961

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

1YJN|1|0|C|557
1YJN|1|0|C|558
1YJN|1|0|U|559
1YJN|1|0|U|560
*
1YJN|1|0|A|597
1YJN|1|0|C|598
1YJN|1|0|G|599
1YJN|1|0|G|600

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L32E