IL_1Z58_018

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1Z58|1|2|G|814, 1Z58|1|2|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_018 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.2375

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

1Z58|1|2|G|687
1Z58|1|2|A|688
1Z58|1|2|A|689
1Z58|1|2|A|690
1Z58|1|2|C|691
*
1Z58|1|2|G|812
1Z58|1|2|A|813
1Z58|1|2|G|814
1Z58|1|2|A|815
1Z58|1|2|U|816
1Z58|1|2|A|817
1Z58|1|2|G|818
1Z58|1|2|C|819

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains