IL_1Z58_040

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUGU*GCGC

Length

9 nucleotides

Bulged bases

1Z58|1|2|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_040 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.2703

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

1Z58|1|2|G|1042
1Z58|1|2|A|1043
1Z58|1|2|U|1044
1Z58|1|2|G|1045
1Z58|1|2|U|1046
*
1Z58|1|2|G|1131
1Z58|1|2|C|1132
1Z58|1|2|G|1133
1Z58|1|2|C|1134

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains