IL_1Z58_048

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1Z58|1|2|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_048 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2299

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

1Z58|1|2|C|1221
1Z58|1|2|G|1222
1Z58|1|2|G|1223
1Z58|1|2|A|1224
1Z58|1|2|G|1225
1Z58|1|2|A|1226
1Z58|1|2|A|1227
1Z58|1|2|G|1228
*
1Z58|1|2|U|1247
1Z58|1|2|G|1248
1Z58|1|2|G|1249
1Z58|1|2|A|1250
1Z58|1|2|G|1251

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains