IL_1Z58_064

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AUCG*CGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_064 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.319

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

1Z58|1|2|A|1499
1Z58|1|2|U|1500
1Z58|1|2|C|1501
1Z58|1|2|G|1502
*
1Z58|1|2|C|1518
1Z58|1|2|G|1519
1Z58|1|2|G|1520
1Z58|1|2|U|1521

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains