IL_1Z58_075

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1Z58|1|2|C|1792, 1Z58|1|2|C|1808, 1Z58|1|2|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_075 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.2351

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1Z58|1|2|U|1789
1Z58|1|2|G|1790
1Z58|1|2|C|1791
1Z58|1|2|C|1792
1Z58|1|2|A|1793
1Z58|1|2|A|1794
1Z58|1|2|C|1795
*
1Z58|1|2|G|1805
1Z58|1|2|G|1806
1Z58|1|2|A|1807
1Z58|1|2|C|1808
1Z58|1|2|G|1809
1Z58|1|2|U|1810
1Z58|1|2|A|1811
1Z58|1|2|U|1812
1Z58|1|2|A|1813

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains