IL_23WI_007
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAUAC*GGGGUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_007 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.0696
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
23WI|1|5|C|915
23WI|1|5|G|916
23WI|1|5|A|917
23WI|1|5|A|918
23WI|1|5|U|919
23WI|1|5|A|920
23WI|1|5|C|921
*
23WI|1|A|G|856
23WI|1|A|G|857
23WI|1|A|G|858
23WI|1|A|G|859
23WI|1|A|U|860
23WI|1|A|A|861
23WI|1|A|G|862
Current chains
- Chain 5
- RNA (2014-MER)
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L30
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