IL_23WI_061

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

23WI|1|5|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_061 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.097

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

23WI|1|5|A|2070
23WI|1|5|A|2071
*
23WI|1|5|U|2438
23WI|1|5|A|2439
23WI|1|5|C|2440
23WI|1|5|U|2441

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2