IL_23WI_147

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

23WI|1|a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_147 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1853

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

23WI|1|a|U|662
23WI|1|a|A|663
23WI|1|a|G|664
23WI|1|a|A|665
23WI|1|a|G|666
*
23WI|1|a|U|740
23WI|1|a|G|741
23WI|1|a|G|742
23WI|1|a|A|743

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain f

Small ribosomal subunit protein bS6, non-modified isoform

Chain o

Small ribosomal subunit protein uS15

Chain r

Small ribosomal subunit protein bS18