IL_23WI_169

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

23WI|1|a|A|1257, 23WI|1|a|A|1280, 23WI|1|a|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_169 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.533

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

23WI|1|a|G|1255
23WI|1|a|A|1256
23WI|1|a|A|1257
23WI|1|a|G|1258
*
23WI|1|a|C|1277
23WI|1|a|G|1278
23WI|1|a|G|1279
23WI|1|a|A|1280
23WI|1|a|C|1281
23WI|1|a|C|1282

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14