IL_23WI_178
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_23WI_178 not in the Motif Atlas
- Geometric match to IL_8B0X_062
- Geometric discrepancy: 0.0843
- The information below is about IL_8B0X_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.3
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
23WI|1|a|A|1430
23WI|1|a|A|1431
23WI|1|a|G|1432
23WI|1|a|A|1433
23WI|1|a|A|1434
23WI|1|a|G|1435
*
23WI|1|a|C|1466
23WI|1|a|C|1467
23WI|1|a|A|1468
23WI|1|a|C|1469
23WI|1|a|U|1470
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- Large ribosomal subunit protein uL14
- Chain P
- 50S ribosomal protein L19
- Chain t
- Small ribosomal subunit protein bS20
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