IL_28LN_054
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_054 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.337
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
28LN|1|A2|C|1098
28LN|1|A2|G|1099
28LN|1|A2|A|1100
28LN|1|A2|U|1101
28LN|1|A2|G|1102
28LN|1|A2|C|1103
*
28LN|1|A2|G|1129
28LN|1|A2|G|1130
28LN|1|A2|G|1131
28LN|1|A2|C|1132
28LN|1|A2|A|1133
28LN|1|A2|G|1134
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- Small ribosomal subunit protein uS2
- Chain AB
- 40S ribosomal protein S3a
- Chain AN
- 40S ribosomal protein S13
- Chain AR
- 40S ribosomal protein S17
- Chain Aa
- 40S ribosomal protein S26
- Chain Ab
- 40S ribosomal protein S27
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