IL_28LN_086
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_086 not in the Motif Atlas
- Homologous match to IL_9PN5_223
- Geometric discrepancy: 0.2923
- The information below is about IL_9PN5_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
28LN|1|A2|C|1708
28LN|1|A2|G|1709
28LN|1|A2|C|1710
28LN|1|A2|U|1711
*
28LN|1|A2|A|1822
28LN|1|A2|A|1823
28LN|1|A2|A|1824
28LN|1|A2|A|1825
28LN|1|A2|G|1826
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AX
- Small ribosomal subunit protein uS12
- Chain Ah
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: