IL_28LN_190

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCC*GUGAG

Length

8 nucleotides

Bulged bases

28LN|1|B5|A|2724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_190 not in the Motif Atlas

Geometric match to IL_5DO4_004

Geometric discrepancy: 0.3993

The information below is about IL_5DO4_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77718.1

Basepair signature

cWW-L-cSW-cWW

Number of instances in this motif group

11

Unit IDs

28LN|1|B5|C|2612
28LN|1|B5|C|2613
28LN|1|B5|C|2614
*
28LN|1|B5|G|2721
28LN|1|B5|U|2722
28LN|1|B5|G|2723
28LN|1|B5|A|2724
28LN|1|B5|G|2725

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain Bg

60S ribosomal protein L34