IL_28LN_200

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

28LN|1|B5|U|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_200 not in the Motif Atlas

Homologous match to IL_8GLP_108

Geometric discrepancy: 0.0654

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

28LN|1|B5|C|2866
28LN|1|B5|G|2867
28LN|1|B5|U|2868
28LN|1|B5|A|2869
28LN|1|B5|A|2870
28LN|1|B5|C|2871
*
28LN|1|B5|G|2876
28LN|1|B5|G|2877
28LN|1|B5|A|2878
28LN|1|B5|U|2879
28LN|1|B5|A|2880
28LN|1|B5|A|2881
28LN|1|B5|G|2882

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ah

60S ribosomal protein L41

Chain Bp

60S ribosomal protein L37a