IL_2AAR_005

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGAG*CUUUGACU

Length

13 nucleotides

Bulged bases

2AAR|1|0|U|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_005 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.3035

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

2AAR|1|0|A|80
2AAR|1|0|C|81
2AAR|1|0|G|82
2AAR|1|0|A|83
2AAR|1|0|G|84
*
2AAR|1|0|C|96
2AAR|1|0|U|97
2AAR|1|0|U|98
2AAR|1|0|U|99
2AAR|1|0|G|100
2AAR|1|0|A|101
2AAR|1|0|C|102
2AAR|1|0|U|103

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L29