IL_2AAR_018

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2AAR|1|0|G|814, 2AAR|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_018 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.0871

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|G|687
2AAR|1|0|A|688
2AAR|1|0|A|689
2AAR|1|0|A|690
2AAR|1|0|C|691
*
2AAR|1|0|G|812
2AAR|1|0|A|813
2AAR|1|0|G|814
2AAR|1|0|A|815
2AAR|1|0|U|816
2AAR|1|0|A|817
2AAR|1|0|G|818
2AAR|1|0|C|819

Current chains

Chain 0

23S ribosomal RNA

Nearby chains