IL_2AAR_035

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_035 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.131

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

2AAR|1|0|U|1015
2AAR|1|0|C|1016
2AAR|1|0|C|1017
2AAR|1|0|C|1018
2AAR|1|0|U|1019
2AAR|1|0|A|1020
2AAR|1|0|A|1021
2AAR|1|0|A|1022
*
2AAR|1|0|U|1161
2AAR|1|0|A|1162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains