IL_2AAR_046

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2AAR|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_046 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1278

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

2AAR|1|0|C|1221
2AAR|1|0|G|1222
2AAR|1|0|G|1223
2AAR|1|0|A|1224
2AAR|1|0|G|1225
2AAR|1|0|A|1226
2AAR|1|0|A|1227
2AAR|1|0|G|1228
*
2AAR|1|0|U|1247
2AAR|1|0|G|1248
2AAR|1|0|G|1249
2AAR|1|0|A|1250
2AAR|1|0|G|1251

Current chains

Chain 0

23S ribosomal RNA

Nearby chains