IL_2AAR_052

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

2AAR|1|0|U|1601, 2AAR|1|0|G|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_052 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.3323

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

2AAR|1|0|U|1426
2AAR|1|0|G|1427
2AAR|1|0|G|1428
2AAR|1|0|A|1429
2AAR|1|0|G|1430
*
2AAR|1|0|C|1598
2AAR|1|0|G|1599
2AAR|1|0|U|1600
2AAR|1|0|U|1601
2AAR|1|0|G|1602
2AAR|1|0|A|1603
2AAR|1|0|A|1604
2AAR|1|0|A|1605

Current chains

Chain 0

23S ribosomal RNA

Nearby chains