IL_2AAR_069

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2AAR|1|0|C|1792, 2AAR|1|0|C|1808, 2AAR|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1431

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2AAR|1|0|U|1789
2AAR|1|0|G|1790
2AAR|1|0|C|1791
2AAR|1|0|C|1792
2AAR|1|0|A|1793
2AAR|1|0|A|1794
2AAR|1|0|C|1795
*
2AAR|1|0|G|1805
2AAR|1|0|G|1806
2AAR|1|0|A|1807
2AAR|1|0|C|1808
2AAR|1|0|G|1809
2AAR|1|0|U|1810
2AAR|1|0|A|1811
2AAR|1|0|U|1812
2AAR|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains