IL_2AAR_119

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2AAR_119 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.1069

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|G|1683
2AAR|1|0|G|1684
2AAR|1|0|A|1685
2AAR|1|0|A|1686
2AAR|1|0|C|1687
2AAR|1|0|U|1688
2AAR|1|0|U|1689
2AAR|1|0|U|1690
2AAR|1|0|G|1691
*
2AAR|1|0|C|1973
2AAR|1|0|U|1974
2AAR|1|0|G|1975
2AAR|1|0|U|1976
2AAR|1|0|C|1977

Current chains

Chain 0

23S ribosomal RNA

Nearby chains