IL_2FEY_035

3D structure

PDB id

2FEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of stem loop IV of Tetrahymena telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUUG*CAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2FEY_035 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.3647

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

2FEY|9|A|U|14
2FEY|9|A|U|15
2FEY|9|A|U|16
2FEY|9|A|G|17
*
2FEY|9|A|C|31
2FEY|9|A|A|32
2FEY|9|A|A|33

Current chains

Chain A

stem-loop IV of Tetrahymena telomerase RNA

Nearby chains