IL_2J28_051

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2J28|1|B|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_051 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.176

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

2J28|1|B|C|1208
2J28|1|B|U|1209
2J28|1|B|G|1210
2J28|1|B|C|1211
2J28|1|B|G|1212
2J28|1|B|A|1213
2J28|1|B|A|1214
2J28|1|B|G|1215
*
2J28|1|B|U|1234
2J28|1|B|G|1235
2J28|1|B|G|1236
2J28|1|B|A|1237
2J28|1|B|G|1238

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15

Chain Q

50S RIBOSOMAL PROTEIN L20