IL_2J28_075

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2J28|1|B|A|1801, 2J28|1|B|C|1816, 2J28|1|B|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_075 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2J28|1|B|U|1798
2J28|1|B|G|1799
2J28|1|B|C|1800
2J28|1|B|A|1801
2J28|1|B|A|1802
2J28|1|B|A|1803
2J28|1|B|C|1804
*
2J28|1|B|G|1813
2J28|1|B|G|1814
2J28|1|B|A|1815
2J28|1|B|C|1816
2J28|1|B|G|1817
2J28|1|B|U|1818
2J28|1|B|A|1819
2J28|1|B|U|1820
2J28|1|B|A|1821

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2