IL_2J28_103

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

2J28|1|B|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_103 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0812

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

2J28|1|B|C|2636
2J28|1|B|U|2637
2J28|1|B|G|2638
2J28|1|B|A|2639
2J28|1|B|G|2640
*
2J28|1|B|C|2774
2J28|1|B|G|2775
2J28|1|B|A|2776
2J28|1|B|G|2777
2J28|1|B|A|2778
2J28|1|B|U|2779
2J28|1|B|G|2780
2J28|1|B|A|2781
2J28|1|B|G|2782

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain J

50S RIBOSOMAL PROTEIN L13