IL_2J28_106
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 2J28|1|B|U|2689, 2J28|1|B|U|2690
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_106 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0665
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
2J28|1|B|U|2687
2J28|1|B|G|2688
2J28|1|B|U|2689
2J28|1|B|U|2690
2J28|1|B|C|2691
*
2J28|1|B|G|2718
2J28|1|B|G|2719
2J28|1|B|U|2720
2J28|1|B|A|2721
2J28|1|B|G|2722
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S RIBOSOMAL PROTEIN L3
- Chain N
- 50S RIBOSOMAL PROTEIN L17
- Chain P
- 50S RIBOSOMAL PROTEIN L19
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