IL_2JL6_052

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_052 not in the Motif Atlas

Geometric match to IL_4V88_418

Geometric discrepancy: 0.1713

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

2JL6|1|A|U|1357
2JL6|1|A|G|1358
2JL6|1|A|A|1359
2JL6|1|A|A|1360
2JL6|1|A|G|1361
*
2JL6|1|A|C|1370
2JL6|1|A|G|1371
2JL6|1|A|U|1372
2JL6|1|A|A|1373
2JL6|1|A|G|1374

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L28

Chain 7

50S RIBOSOMAL PROTEIN L34

Chain D

50S RIBOSOMAL PROTEIN L2