IL_2O32_017

3D structure

PDB id

2O32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of U2 snRNA stem I from human, containing modified nucleotides

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC(OMG)(OMG)C*GCUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O32_017 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3839

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

2O32|17|A|U|3
2O32|17|A|C|4
2O32|17|A|OMG|5
2O32|17|A|OMG|6
2O32|17|A|C|7
*
2O32|17|A|G|14
2O32|17|A|C|15
2O32|17|A|U|16
2O32|17|A|A|17
2O32|17|A|A|18

Current chains

Chain A

5'-R(*(PSU)P*CP*UP*CP*(OMG)P*(OMG)P*CP*CP*(PSU)P*UP*UP*UP*(OMG)P*GP*CP*UP*AP*AP*(OMG)P*A)-3'

Nearby chains