IL_2OGO_016

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2OGO|1|0|G|814, 2OGO|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_016 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1576

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|G|687
2OGO|1|0|A|688
2OGO|1|0|A|689
2OGO|1|0|A|690
2OGO|1|0|C|691
*
2OGO|1|0|G|812
2OGO|1|0|A|813
2OGO|1|0|G|814
2OGO|1|0|A|815
2OGO|1|0|U|816
2OGO|1|0|A|817
2OGO|1|0|G|818
2OGO|1|0|C|819

Current chains

Chain 0

23S ribosomal RNA

Nearby chains