IL_2OGO_048

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2OGO|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_048 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1851

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

2OGO|1|0|C|1221
2OGO|1|0|G|1222
2OGO|1|0|G|1223
2OGO|1|0|A|1224
2OGO|1|0|G|1225
2OGO|1|0|A|1226
2OGO|1|0|A|1227
2OGO|1|0|G|1228
*
2OGO|1|0|U|1247
2OGO|1|0|G|1248
2OGO|1|0|G|1249
2OGO|1|0|A|1250
2OGO|1|0|G|1251

Current chains

Chain 0

23S ribosomal RNA

Nearby chains