IL_2OGO_054

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

2OGO|1|0|U|1601, 2OGO|1|0|G|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_054 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.364

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

2OGO|1|0|U|1426
2OGO|1|0|G|1427
2OGO|1|0|G|1428
2OGO|1|0|A|1429
2OGO|1|0|G|1430
*
2OGO|1|0|C|1598
2OGO|1|0|G|1599
2OGO|1|0|U|1600
2OGO|1|0|U|1601
2OGO|1|0|G|1602
2OGO|1|0|A|1603
2OGO|1|0|A|1604
2OGO|1|0|A|1605

Current chains

Chain 0

23S ribosomal RNA

Nearby chains