IL_2OGO_107

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

2OGO|1|0|U|2668, 2OGO|1|0|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_107 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1607

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|U|2666
2OGO|1|0|C|2667
2OGO|1|0|U|2668
2OGO|1|0|C|2669
2OGO|1|0|C|2670
*
2OGO|1|0|G|2698
2OGO|1|0|G|2699
2OGO|1|0|U|2700
2OGO|1|0|A|2701
2OGO|1|0|G|2702

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3