IL_2OGO_120

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_120 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.1267

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|G|1683
2OGO|1|0|G|1684
2OGO|1|0|A|1685
2OGO|1|0|A|1686
2OGO|1|0|C|1687
2OGO|1|0|U|1688
2OGO|1|0|U|1689
2OGO|1|0|U|1690
2OGO|1|0|G|1691
*
2OGO|1|0|C|1973
2OGO|1|0|U|1974
2OGO|1|0|G|1975
2OGO|1|0|U|1976
2OGO|1|0|C|1977

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3