IL_2YKR_038
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- UCAGAU*AUCUGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: UCAGAU,AUCUGA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_038 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3198
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
2YKR|1|A|U|598
2YKR|1|A|C|599
2YKR|1|A|A|600
2YKR|1|A|G|601
2YKR|1|A|A|602
2YKR|1|A|U|603
*
2YKR|1|A|A|635
2YKR|1|A|U|636
2YKR|1|A|C|637
2YKR|1|A|U|638
2YKR|1|A|G|639
2YKR|1|A|A|640
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain H
- 30S RIBOSOMAL PROTEIN S8
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: