IL_3BBX_035

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

3BBX|1|B|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_035 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0882

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

3BBX|1|B|C|998
3BBX|1|B|U|999
3BBX|1|B|A|1000
3BBX|1|B|A|1001
3BBX|1|B|G|1002
*
3BBX|1|B|C|1153
3BBX|1|B|G|1154
3BBX|1|B|A|1155
3BBX|1|B|A|1156
3BBX|1|B|G|1157

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain Y

50S ribosomal protein L30