IL_3BBX_042

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

3BBX|1|B|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_042 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1351

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

3BBX|1|B|G|1059
3BBX|1|B|U|1060
3BBX|1|B|U|1061
3BBX|1|B|G|1062
*
3BBX|1|B|C|1076
3BBX|1|B|A|1077
3BBX|1|B|U|1078
3BBX|1|B|C|1079

Current chains

Chain B

23S ribosomal RNA

Nearby chains