IL_3BBX_099

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

3BBX|1|B|U|2689, 3BBX|1|B|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_099 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.067

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3BBX|1|B|U|2687
3BBX|1|B|G|2688
3BBX|1|B|U|2689
3BBX|1|B|U|2690
3BBX|1|B|C|2691
*
3BBX|1|B|G|2718
3BBX|1|B|G|2719
3BBX|1|B|U|2720
3BBX|1|B|A|2721
3BBX|1|B|G|2722

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19