IL_3DEG_003

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

3DEG|1|G|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DEG_003 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.136

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

3DEG|1|G|G|1059
3DEG|1|G|U|1060
3DEG|1|G|U|1061
3DEG|1|G|G|1062
*
3DEG|1|G|C|1076
3DEG|1|G|A|1077
3DEG|1|G|U|1078
3DEG|1|G|C|1079

Current chains

Chain G

50S RNA helix 42-44

Nearby chains

Chain H

50S ribosomal protein L11