3D structure

PDB id
3DHS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
AUCA*UGAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary: AUCA,UGAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3DHS_001 not in the Motif Atlas
Geometric match to IL_5EW4_002
Geometric discrepancy: 0.2812
The information below is about IL_5EW4_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

3DHS|1|A|A|5
3DHS|1|A|U|6
3DHS|1|A|C|7
3DHS|1|A|A|8
*
3DHS|1|A|U|407
3DHS|1|A|G|408
3DHS|1|A|A|409
3DHS|1|A|U|410

Current chains

Chain A
RNase P RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1041 s
Application loaded.