IL_3EOG_013

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UA*UACG

Length

6 nucleotides

Bulged bases

3EOG|1|A|A|376, 3EOG|1|A|C|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOG_013 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.1231

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

3EOG|1|A|U|365
3EOG|1|A|A|366
*
3EOG|1|A|U|375
3EOG|1|A|A|376
3EOG|1|A|C|377
3EOG|1|A|G|378

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*UP*UP*AP*UP*UP*A)-3'