IL_3J0L_033
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAGU*AUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J0L_033 not in the Motif Atlas
- Geometric match to IL_402D_001
- Geometric discrepancy: 0.2893
- The information below is about IL_402D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
3J0L|1|7|C|2832
3J0L|1|7|A|2833
3J0L|1|7|G|2834
3J0L|1|7|U|2835
*
3J0L|1|7|A|2853
3J0L|1|7|U|2854
3J0L|1|7|U|2855
3J0L|1|7|G|2856
Current chains
- Chain 7
- 60S ribosomal RNA fragment
Nearby chains
- Chain J
- Ribosomal protein L10
- Chain Y
- Transfer RNA; tRNA
Coloring options: