IL_3J0P_004
3D structure
- PDB id
- 3J0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 3J0P|1|a|A|573, 3J0P|1|a|U|575
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J0P_004 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1506
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J0P|1|a|G|556
3J0P|1|a|U|557
3J0P|1|a|G|558
3J0P|1|a|C|559
3J0P|1|a|C|560
3J0P|1|a|A|561
3J0P|1|a|G|562
*
3J0P|1|a|C|569
3J0P|1|a|G|570
3J0P|1|a|G|571
3J0P|1|a|U|572
3J0P|1|a|A|573
3J0P|1|a|A|574
3J0P|1|a|U|575
3J0P|1|a|U|576
3J0P|1|a|C|577
Current chains
- Chain a
- 40S ribosomal RNA fragment
Nearby chains
- Chain L
- Ribosomal protein S23
- Chain X
- Ribosomal protein S30
- Chain Y
- Transfer RNA; tRNA
- Chain f
- 40S ribosomal RNA fragment
- Chain y
- mRNA fragment
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