IL_3J28_043

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_043 not in the Motif Atlas

Geometric match to IL_5J7L_034

Geometric discrepancy: 0.3191

The information below is about IL_5J7L_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

3J28|1|N|A|673
3J28|1|N|G|674
3J28|1|N|A|675
3J28|1|N|A|676
3J28|1|N|U|677
3J28|1|N|U|678
*
3J28|1|N|A|712
3J28|1|N|G|713
3J28|1|N|G|714
3J28|1|N|A|715
3J28|1|N|A|716
3J28|1|N|U|717

Current chains

Chain N

16S rRNA

Nearby chains