IL_3J28_044

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_044 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.4508

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

3J28|1|N|U|684
3J28|1|N|G|685
3J28|1|N|U|686
3J28|1|N|A|687
3J28|1|N|G|688
*
3J28|1|N|C|699
3J28|1|N|G|700
3J28|1|N|U|701
3J28|1|N|A|702
3J28|1|N|G|703
3J28|1|N|A|704
3J28|1|N|G|705
3J28|1|N|A|706

Current chains

Chain N

16S rRNA

Nearby chains