IL_3J28_047

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_047 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.2671

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

3J28|1|N|G|887
3J28|1|N|G|888
3J28|1|N|A|889
3J28|1|N|G|890
3J28|1|N|U|891
3J28|1|N|A|892
3J28|1|N|C|893
3J28|1|N|G|894
*
3J28|1|N|U|905
3J28|1|N|A|906
3J28|1|N|A|907
3J28|1|N|A|908
3J28|1|N|A|909
3J28|1|N|C|910

Current chains

Chain N

16S rRNA

Nearby chains